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CURRENT COURSES
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Proteomics and Bioinformatics (Course XXXX) March 5th, 2010 This lecture is designed to provide a brief overview of metabolomics including its place in the field of so-called "omics technologies". In addition, an extended introduction to the KEGG database suite is provided including tutorial information. Lastly, these conecepts are incorporated into a brief summary of the field of systems biology.. The full lecture can be downloaded here [PDF, 47 MB file!] The necessary text files to perform the examples in the lecture are available below Sample microarry data [PDF] KegArray sample microarry data [PDF] KegArray sample metabolite/compound data [PDF] A useful resource for a KEGG tutorial: Aoki and Kanehisa (2005) Using the KEGG database resource. Current Protocols in Bioinformatics. Chapter 1:Unit 1.12. [PDF] Publication of the KegArray tool for mapping omics data to the KEGG database suite: Wheelock et al (2009) Systems biology approaches and pathway tools for investigating cardiovascular disease. Molecular BioSystems 5(6):588-602. [PDF] |
Multi- and Megavariate Analysis in Omics Research (Course 2239) February 9-13th, 2009 Following successful completion of the course, students will have a basic level of knowledge regarding multivariate analysis of large-scale datasets aquired in omics research. Given the practical focus of the course, students will be sufficiently proficient users of the SIMCA-P+ analysis software to be able to apply learned methodologies in their own research projects. The course curriculum can be downloaded here [PDF] The course material is divided into 3 different handouts that can be downloaded below (very large files) Multivariate Analysis - Handouts, Exercises and Solutions [PDF, 15MB file] Design of Experiments - Handouts, Exercises and Solutions [PDF, 33MB file] Multivariate Analysis in Omics Research - Handouts, Exercises and Solution [PDF, 10MB file] Map to course location: yellow arrows indicate entrance doors, red cross indicate the Sivert room. [PDF] |
General and Organic Chemistry for the Biomedicine Program Fall 2009 Undergraduate course in general and organic chemistry. Substitution Laboratory lecture (downloadable powerpoint file) (SN2 and SN1 animations) Stereochemistry lecture (geometric isomers, cyclohexane conformations) (downloadable PDF file) Chirality lecture (enantiomers, stereoisomers and planes of symmetry) (downloadable PDF file) |
Systems Biology and the Omics Cascade (Course 2143) June 9-13th, 2008 All course material is available on line here: Systems Biology and the Omics Cascade Following successful completion of the course, the student will acquire a basic level of knowledge regarding systems biology and different omics-related technologies used in the acquistion of large-scale datasets. In addition, students will be updated on recent findings within these fields. Specifically, students will be able to: Reflect on the utility of omics-related research in terms of hypothesis generation and experimental design. Relate to principle the appropriate applications of different computer programming languages and algorithms. Theorize on the future development of omics-related research approaches and systems biology, as well as motivate the answer.The complete course curriculum can be downloaded here [PDF] |
Medical Biochemistry (Lipid Metabolism Module) Spring 2009 Undergraduate biochemistry course, with focus on human metabolism of carbohydrates, lipids, proteins and nucleic acids. The course content is especially directed towards chemical processes of medical significance. Laboratory and seminar based sessions provide advanced methods in biochemistry and their practical applications. Lipid biosynthesis lecture (downloadable PDF file) Lipid oxidation lecture (downloadable PDF file) Leukotriene laboratory manual (downloadable PDF file) Leukotriene laboratory lecture (downloadable PDF file) |
Preparatory Course in Lipid Research (2FF002) 30.0 higher education credits The courses goal is to give practical and theoretical knowledge in lipid research in both an experimental and clinical context. |
